Search

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … all connected. And you can color these nodes. For example, based on taxonomy, or based on class of biosynthetic … we noticed that BiG-SCAPE was very scalable compared to approaches before that. But when you wanted to include more …

Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the … functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or …

Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our …

The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

… . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … use different plants both for laboratory research and for improving feedstock crops: Center for Advanced Bioenergy and … to sustainable, economically viable production of bio-based products and advanced biofuels. The center focuses on …

… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … advanced liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational …

Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including sunlight, …

… episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British … institutions in developing nations to do natural products based drug discovery, predominantly in diseases of … orthogonal perspectives. And sometimes one of those approaches would work more, would be more successful, and …

To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … gaps in the under-sampled area of the plant phylogeny and improving genome annotations. For that undertaking, new …

See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and …

… is, then this is the podcast for you. A lot of this is based on a really great paper that came out in 2020 where … about the metabolomic data that, very nicely, with new approaches like that one push forward by Pieter Dorrestein – … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access … an era of ‘homology creep’, function prediction as purely based on annotation may not be sufficient. A more recent … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …