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Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …

… is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …

And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … genome sequence, in about 40% of the genome the genes were completely unidentifiable. You had no idea what they were …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … called Ecopia was talking about a gene cluster a week. They completed a gene cluster per week. And that really got me …

… proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact … There is no cost to the user and no granting of funds. … A complete listing of approved proposals can be found …

… will generate an email that will go to an administrator to complete the process. … Guidelines detailing the quantity … listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

… exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain … with known receptors, but we also have ones that are completely their own cluster. And so we're hypothesizing …

… of your sequencing project at any time by logging on to the Genome Portals using your JGI login. After sequencing/metabolomics has completed, your Project Manager will initiate analysis with … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … staff to onboard users and guide them through the process of working with our facility. This includes help with: …

… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …

See below for examples of successful Letters of Intent to our Community Science … Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic …