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… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … This is our interview with Nadine Ziemert, from the University of …

… DAN: You’re listening to the US. .Department of Energy Joint Genome … by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a … genome mining together. Marc was the Head of Experimental Genomics there, before he decided to leave for graduate …

… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic … biological function. The  New Investigator and Functional Genomics calls do not require an LOI.  Projects will be …

… To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and … (Neochromosome) have worked to replace yeast’s native chromosomes with synthetic versions. This project has turned …

… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … the Contracts Officer will send required paperwork to your institution. (Samples of the JGI User Agreement , JGI User …

… Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding … and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … gene expression, providing deeper insights into functional genomics. A key focus is understanding the interactions …

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … barcode-based genetics (RB-TnSeq), and computational genomics to better understand the plant-associated …

… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , …

… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … The researcher then submits a proposal for consideration in the next review cycle. All proposals undergo technical …

… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials proposal call . This … proposal.  Submit research proposals  here that integrate genomics with nanoscale science, accelerating discoveries … The JGI supports remote users. Users conduct experiments in their own labs or collect field samples. Depending on the …

… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … a good catalog of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …

… as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … a BGC fragment can be useful in some way if you’re doing comparative analysis. We want to make sure we had everything …