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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside … size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our conversation …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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The Expanding Universe of Methane Metabolisms in Archaea
… into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … methanogenesis, methanotrophy, and short-chain alkane oxidation metabolisms. They also identified a set of 38 …
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A One‐Pot Biocatalytic Cascade to Access Diverse l‐Phenylalanine Derivatives from Aldehydes or Carboxylic Acids
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Oxidative Pathways of Deoxyribose and Deoxyribonate Catabolism
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in … ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ …
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Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Diversity and evolution of nitric oxide reduction in bacteria and archaea.
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data …
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