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… compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach S, et … Metagenome Interpretation-a benchmark of metagenomics software. Nature Methods  14(11):1063-1071 Bowers RM, et al. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this … metabolomics products At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …

… approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … , DNA Synthesis Appendix  and DNA Sequencing Appendix are available for download.)  After your home institution …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … microbial lineages. Charting viral ‘dark matter’:   Viruses are abundant in the biosphere and influence microbial …

… such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic tree … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate … genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The … protocols, course materials and bioinformatics exercises are freely available through the links below. Naturalist …

… in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and … microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental … biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of …

… correspondence with you if the User Agreement and Appendix are active and if no additional signatures are required. … IMG/M   (citation: https://doi.org/10.1093/nar/gkaa939 Fungi: Mycocosm (citation: … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

The User Support Analysis group provides computational analysis for new … analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …

… opportunity for researchers to request the capabilities and expertise of multiple DOE National User Facilities in … on high-risk/high-payoff proposals within the focused topic areas that can be completed on an accelerated timeline as … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… lives, they all process loads of tough plants. Thanks to gut microbes — namely, anaerobic fungi — these animals are able to pry apart plant polymers …

Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly link …