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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …
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A Catalog of Reference Genomes from the Human Microbiome
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of … Episode Transcript … This is episode 5 of Natural Prodcast, our conversation with Brad Moore, a …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th … Notable Stories …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … data analyses compile original data for improving fungal genomic resources empower students through isolation and …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of … Metabolites Collaboratory and trying to have a good catalog of what’s out there so that we can do more … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now analyze new datasets by comparing … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … of organisms, so things like the NRL database - or online catalog, I guess. So we've also been able to get soils from … is you will mix together your receptor of interest with genomic DNA, and then allow that to bind. Your receptor also …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … to do some really exciting work on figuring out how to get genomic sequencing data for the fungus garden because it’s …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … to support AI applications. In an effort to lead AI-driven genomic innovation to advance biotechnology, the JGI …
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