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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … train students and professors in laboratory techniques and data analyses compile original data for improving fungal … … The Mycocosm portal supports the annotation, comparative analysis, and distribution of fungal genome datasets. It …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with … accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …
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Webinars on Offerings & Capabilities
Below are a list of webinars that can help you through the … understanding the capabilities and resources available for your project. Watch all the webinars here . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon …
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JGI Portals
Our data platforms are a key resource for the broader scientific … IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes …
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Natural Prodcast Episode 16: Marcy Balunas
… … DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … massive problems just as much as it brings about massive data into really interesting ways to look at our systems. …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … of system-wide problems. And it’s not just constitutional analysis as a problem, we need corresponding improvements in …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint … we call that whole thing, the “chemistry hub”, and that’s centered right now at Wisconsin, but we’re hoping to have … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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