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… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those … this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), …

… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . … in a microalgae. There were four genes there. Not like a bacterial gene cluster, but they were still clustered in the …

… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … that experience was the chance to see what the industrial life was like. And I think I learned that I’m more of an … of the study when it came out. And that gave us enough coverage that we could ensure that most entries were looked …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … been dominated for … well, as long as I can remember, by bacterial research.  So it was great to hear her passion and …   DAN: Got it.    NANCY: And this is really to complete the genomes, and I’m really thankful for this. It sort of goes …

… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the secondary metabolism side of things was looking at genomes and seeing where the really hard things to sequence … of the opinion that on the geological timescale, that most bacterial natural product systems evolved, you know, a …

… Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for … collapsed, while these issues are not commonly seen with reference isolates. “For secondary metabolite discovery in … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …

… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …

… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … similarity to a gene cluster with a known compound from the reference database: It must be identical. It must be that …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment …