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… SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a …

… staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … Systems Biology Knowledgebase and the National Microbiome Data Collective.    … biotechnology through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, …

… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … so starting from some of the enzymes that we had the most data on and knew the most about, working with my …

… it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, …

… molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental sustainability, …

… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The … resources by exploring the genetic pathways responsible for their synthesis. The Secondary Metabolites Program …

… Minerals and Materials call represents a unique opportunity for researchers to request the capabilities and expertise of … science, accelerating discoveries and developing transformative bio-based technologies that address challenges in … is no cost to the user and no granting of funds. All JGI data is made publicly available in accordance with the JGI’s …

… See below for a list of Frequently Asked Questions about our proposal … ; click on the call link to see specific details including project types supported, sample/capacity limits, and … Many of the submissions are done using web-based forms.   To view the proposal templates, go to the proposal …

… help solve energy and environmental challenges. The 1KFG project represents affiliations at over 180 organizations in … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes …

… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …

… and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to … massive problems just as much as it brings about massive data into really interesting ways to look at our systems. …

… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … every episode we put out. I actually put a lot of time into preparing those transcripts, so I hope somebody’s going to … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …