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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … origins and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Plant Program
… and the environment. At its core, the program investigates photosynthesis — the process that transforms solar energy … researchers use as a model for grasses used to produce biomass, food, feed and forage because it is well-suited to … At a May 2025 workshop, a panel of experts recommended establishing a …
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Mining Metagenomes for Cas Proteins
… acids (aa) in size, half that of previously known class 2 CRISPR enzymes that are typically 950—1400 aa. They were initially identified by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It … out that some of these were shorter than the typical Cas12d proteins and were also found next to cas1 genes. Further …
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Plant Microbial Interactions Group
… 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 … Selected Publications …
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Partnerships: Myco-Ed
… ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging … metagenomic detection pipeline: First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG … U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. …
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Natural Prodcast Episode 18: A CSP Primer
… We don’t want to get a proposal that’s just asking for 20 microbial genomes. That is not a good fit for our annual … require that you include the DOE Auspice Statement in any publications. And that can be found on our website as well. … included in that statement, so that we can track down those publications easier. MENAKA WILHELM: If someone is wrapping …
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DNA Synthesis Program
… has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … genome portals, we study lignocellulose decomposition, CO2 fixation, redox reactions, and plant metabolite …
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Fungal & Algal Program
… pathogens) and as the most efficient degraders of plant biomass. These abilities are crucial for sustainable plant biomass production as well as converting biomass into bioenergy and bioproducts. The program’s fungal … Genomic Encyclopedia of Fungi focuses on aspects of plant feedstock health, biorefinery mechanisms and …
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Who We Are
… Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics … this information freely to the public databases. In 2004, the JGI established itself as a national user … and has grown to serve a worldwide community of more than 2,000 primary users—those who apply for JGI resources and …
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Data Ecosystem
… authoritative providers of data or capabilities in their respective subject area. …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship …
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