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Natural Prodcast Episode 23: Aaron Puri
… natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore the chemistry of … episode , you’ve heard a little about these, and Aaron and JGI are working together to try to understand the enzymology … no longer with us… She’s alive! She just doesn’t work for JGI anymore! [LAUGHTER] AARON PURI: Yeah. That got way more …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and …
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Natural Prodcast Episode 8: Eric Schmidt
… can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have … And that’s related to what my project is with the JGI. Where, it’s again, with ribosomal peptides, we’re … DAN:  Yeah. Do you want to talk a little more about your JGI project?  ERIC:  Sure. So with that project, we’re …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… to the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their … individual researchers from 67 countries. Those from the JGI whose publications rank in the top 1% by citations for field and …
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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its … with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure … that go well beyond genome annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and …
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Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … to the Primer episodes, then you heard me talk about JGI’s Earth Secondary Metabolome initiative, and our … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … to all sequence and annotation data and their comments. … JGI researcher Dan Udwary hosts this “fireside chat”-style … the science and scientists of secondary metabolism. As the JGI acts on its goals in — and builds out its capabilities …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … genome is cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome launched …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … the human genome, an arms race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Natural Prodcast Episode 11: Marnix Medema
… of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And so yeah, we … these tools as well on exciting projects. And like Dan at JGI, we, for example, are really interested in metagenomes …
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