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Natural Prodcast Episode 11: Marnix Medema
… of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And so yeah, we … I’m going to start. We talked about this when we did the primer episode, we talked about genome mining through some …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … research from a broad range of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: …
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Natural Prodcast Episode 6: Marc Chevrette
… describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … So we’ll talk about those kinds of terms when we do our primer, podcast. Welcome, Mark. MARC: Hi yeah. Great to be … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and …
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Natural Prodcast Episode 8: Eric Schmidt
… can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have … one of the things that he looked at – that it’s easy to fall in love with because the creatures are very … you describe the project. Could you just give a short primer for someone who is familiar with biology, but not …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of Energy Office of … 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… talk a lot here about the terminology we use and where it falls short, and maybe what we should be saying to be more … of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like … thing. Another way to approach it is more related to what JGI does, which is sequence genomes. And we just published …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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Natural Prodcast Episode 16: Marcy Balunas
… standard kinds of things and natural products definitely falls outside of that. And so, for me, I think the next step … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Natural Prodcast Episode 5: Brad Moore
Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I … Paul Jensen and Bill Fenical. And we connected to JGI through the Community Sequencing Program, and they …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … more details and registration information. Sign up for our newsletter , the JGI Primer, to stay informed … The JGI and …
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