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Natural Prodcast Episode 5: Brad Moore
… pairs. It was not linear, like Streptomyces , but circular. 10% of the genome encoded natural product pathways. Dan: … and did some meta-T [meta-transcriptomics] on that and identified just a small subset of transcripts up-regulated … vehicles. Brad: You did not! Alison: I did, like 2016, I think. Yes, it was just so funny to hear how they’re …
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Mining Metagenomes for Cas Proteins
… from the University of California, Berkeley, report the identification of active Cas enzymes – dubbed Cas14 – that … aa. They were initially identified by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It … out that some of these were shorter than the typical Cas12d proteins and were also found next to cas1 genes. Further …
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SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Draft Genome Sequences of 10 Strains of the Genus Exiguobacterium
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Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm
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Complete genome sequence of Serratia plymuthica strain AS12
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Complete genome sequence of Ferroglobus placidus AEDII12DO
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A More Intuitive Phytozome Interface
… of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become … accessible as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, nor had … v12 was first deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Natural Prodcast Episode 18: A CSP Primer
… things around nuclear security, energy production, and scientific research, especially at US National Labs, like … proposals as well. I’ve been at the JGI for 20 years, and 10 of those years, I’ve been a project manager. MENAKA … amount that they can request. So the minimum request is 100 kb. The maximum request is 500 kb. DAN UDWARY: For DNA …
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Complete genome sequence of Sulfurimonas autotrophica type strain (OK10T)
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