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FICUS Overview
… increasingly collaborative and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … Previously, researchers had to apply to each facility with separate review schedules and selection processes, …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities … Biology Lab : a user science group dedicated to user project design, assembly, and quality control Strain … maintain software that support the JGI’s Synthetic Biology Program.    Representative software includes: … Plus: …
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Natural Prodcast Episode 16: Marcy Balunas
… based in Panama and was dual there and at Scripps where I first met Dan. I think you were almost finishing when I was … out into each of those eggs. And so as the jelly coat is wrapping around, the bacteria are also being deposited in … folks, looking at the tropics because of this immense amount of biodiversity.  What we don’t do is spend a lot of …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… back for our second season of Natural Prodcast. This first episode up is another primer episode. These are … As always, you’ll find transcripts and show notes with links to lots of other resources, especially for these … And so when I came into graduate school, I worked on that project. And it was working exactly that same kind of way, …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the … for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community … visible and available in JGI systems. Users not involved with the proposal under which the data were generated (e.g. …
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CSP Functional Genomics
… information into biological function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics … genome function, particularly those not readily achievable without the capabilities and expertise available at the JGI. … will be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the …
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How to Submit Sequencing Samples
… the process. If you have any questions, please contact your Project Manager or jgi-project_mana[email protected] . … 1) … prior to shipment to the  JGI. The documents below (posted with permission) demonstrate the importance of proper … & quality requirements for samples submitted to the DOE JGI. Plate-based Preparation Guidelines DNA Preparation …
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Natural Prodcast Episode 20: Brian Bachmann
DAN UDWARY: So Brian is a very old friend. We were graduate students together in Craig Townsend’s lab way back in the … be interested in developing them, doing the substantial amount of effort to develop them because they’re not … is a straight line going right back to my sophomore year of college. DAN UDWARY: So where do you see that in the future …
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Natural Prodcast Episode 1: The Primer, Part 1
… secondary metabolism.  DAN: Hey there, and welcome to the first episode of Natural Prodcast. First, maybe, a little … metabolism – field, though, is real, and it’s a field with very real and truly amazing science with a long … in partnering with us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … choice Glycerol stock of sequence verified clone depends on project DNA Synthesis Combinatorial libraries Multiple genes … clones if low number of variants, or pool of variants with sample sequencing to predict the number of successful …
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User Support
The JGI Project Management Office carries out a number of activities … world-class science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope … Process (WIP) interface. To submit a proposal, users must first log in (Note: new users of the JGI will need to …
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JGI Portals
Our data platforms are a key resource for the broader scientific … databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to … over 15 million viral genomes and fragments, enriched with functional annotation, taxonomic classification, and …
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