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Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil
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Natural Prodcast Episode 21: Elizabeth Parkinson
… or online catalog, I guess. So we've also been able to get soils from Purdue campus itself and been able to actually … have several undergrads from the lab go out and get soil from different areas around their dorm and things like … ignorant question. So if you have these organisms in a soil sample-- BETSY PARKINSON: Yes. JACKIE: --how does that …
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The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis
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Metagenomic stable isotope probing reveals bacteriophage participation in soil carbon cycling
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Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. … culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … can do. For example, understanding virus-host dynamics in soil microbiomes could allow for more accurate ecosystem …
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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Microbiome Data Science Team
… al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . … 8(1):1424. Sczyrba A, et al. (2017) Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics … information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… an environment. For example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how freshwater … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … (LLNL), the Microbes Persist: Systems Biology of the Soil Microbiome  Science Focus Area (SFA), is producing …
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Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
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