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Microbiome Data Science Team
… diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and … and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in the group include … Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509. …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge … techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut … labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in … deciding on what was essential. There were multiple waste streams to consider, including unneeded chemicals, unopened …
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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at … was adjacent to what I worked on, but my experience of how microbes are interacting in the environment like, like my … questions or comments, you can contact us on Twitter at @JGI or @danudwary , or by email to jgi[email protected] . We’d …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… dwindling water resources and restoring and maintaining healthy soils – are at the heart of sustaining food and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … come from livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded … well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world to map …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Natural Prodcast Episode 15: Katherine Duncan
… until I was back at University, so it must be about a month, a month and a half later. In September, I went to a … what’s important in terms of the chemistry produced by microbes. And by what’s important, I mean, like, where … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Natural Prodcast Episode 20: Brian Bachmann
… you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk … been sitting on all these great interviews recorded a few months ago at the SIMB Natural Products meeting and it’s … them on a regular basis. So they are full of terrestrial microbes. So they’re open ecosystems. They’re not sealed off …
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