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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Corals in Hot Water Get Help From Their Microbes
… As waters warm due to climate change, corals are in mortal peril. But corals comprise multiple organisms: a … When warm waters stress corals, it might be their microbes, including their photosynthetic partner, that help them take …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first … genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the … pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the Stable …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … is not limited to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within … elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … SIP allows researchers to go beyond understanding which microbes are present in a sample, to generate data about … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even better, …
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Thermochemical wastewater valorization via enhanced microbial toxicity tolerance
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as … Looking for BBTools? Find it here.  …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance … is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  … sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level … at the JGI. The quality of the starting material is one of the greatest predictors of a successful sequencing …
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