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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, … without a defined nucleus). Colder waters nearer the poles, however, tend to favor eukaryotes ( microorganisms with a … — with a desire to understand the nuance and gradation of how eukaryotic phytoplankton communities change with …
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Natural Prodcast Episode 3: The Primer, Part 3
… need to test it. Some testing might be hard, depending on how you’re doing the testing. If you have a successful test, … And that can that can take a long time depending on how the purification goes. In order to be a drug, you also … been shared for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise …
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Natural Prodcast Episode 18: A CSP Primer
… listener, then you’ll recognize this material, though my show is a little more free-form, and this is the longer cut … I get lots of questions from scientists about whether and how they can work with the JGI, and, you know, I’m always … research community. MENAKA WILHELM: Yeah. That makes sense. And then, if we fast forward to the end of a …
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Metabolomics
… experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative … fungi by James et al. and Sekimoto et al . In both studies, however, Olpidium was unexpectedly grouped with … when fungi first invaded land. Intuitively, it makes much sense. Transition to the terrestrial ecosystems exposed …
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Sequencing Submission Requirements for DNA Synthesis
Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several … M. Wayne Davis or commercial options include SnapGene . … How To Use ApE To save your ApE file as a Genbank file, …
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Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous Fungus Neurospora tetrasperma
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science … and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A … Institute for Plant Breeding Research (MPIPZ) studied how fungi associate with roots in A. thaliana plants. The …
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Biosynthesis of Cytosporones in Leotiomycetous Filamentous Fungi
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Effects of Polar Light Cycle on Microbial Food Web
In these frigid systems, where organisms higher up in the food web like fish do not exist, nutrient cycling takes … sequencing. A study  recently published in  Microbiome shows that the way nutrients flow through the ecosystem of …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 … also the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …
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Metabolomics Program
… metabolomics with genomic data to gain insights into how small molecules function within plants, microbes, and … biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of … understanding enzymatic transformations, pathways, and how changes in metabolism can affect ecosystem functions. …
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