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Natural Prodcast Episode 24: Jackie Winter and SMC
Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … in this hypersaline environment, which can range from 8% to 28% salinity. We have toxic metals, so these concentrations … to help our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there …
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Natural Prodcast Episode 20: Brian Bachmann
… went on to work at a groundbreaking company in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … around drug discovery, which includes screening methods, genome mining in cave microbiomes, and using engineered …
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Distinct and rich assemblages of giant viruses in Arctic and Antarctic lakes
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Single Cell Research Group
Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … Jensen G. J., Kyrpides N. C., Koonin E. V., Woyke T . Giant viruses with an expanded complement of translation system …
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VEGA Symposium
… on how to best capture and characterize uncultivated viruses, understand the role of viruses in natural … (LBNL), Stephanie Servetas (NIST), Devaki Bhaya (Stanford), Gary Trubl (LLNL), Scott Jackson (NIST) …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could … archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes … out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in …
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IMG 4 version of the integrated microbial genomes comparative analysis system
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IMG: the integrated microbial genomes database and comparative analysis system
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers … viruses (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial …
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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … portal. The Fungal & Algal Program aims to streamline genome analysis workflows for microbial eukaryotes, build …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and Margot Bezrutczyk in a  recent episode of the Genome Insider podcast. All together, these data offer a granular …
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Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
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