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M. and Roux, S. (2021) Extreme dimensions — how big (or small) can tailed phages be?  Nature Reviews Microbiology.   … standing virus-host interactions. ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses revealed as … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …

Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … change etc) and structural rearrangements, alignment files 384/454 Fungal Transcriptome RNA for expression profiling and …

… the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to …

… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological systems, sheds …

… proposal on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access to all JGI genomic …

… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art … (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes …

Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … fact in the field whatsoever.” Focusing on Carbon Flux and Future Directions The team reported producing BDO at the … grams per Liter-hour in a system optimized for developing small-scale prototypes. Additionally, the team also used a …

Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., …

Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among … a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  … to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the …