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… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …

… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … Powered Life grant. RS is supported by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734. …

The CSP Functional Genomics call is to enable users to perform state-of-the-art … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …

… proposal on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact …

The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … technology in order to enhance the quality of single-cell genomes and directly link functional information with …

… explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …

With collaborative user projects, the JGI’s Plant Program delves … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is …

Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is …

… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …

The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to …

… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Hear more from Ben Cole and Margot Bezrutczyk in a  recent episode of the Genome Insider podcast. All together, these data offer a granular …