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… for amplifying the JGI’s impact. Data generated from a single investment will be reused for further … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … for comprehensive access to information regarding genome and metagenome sequencing projects, and their …

… DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 …

… the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … change etc) and structural rearrangements, alignment files 384/454 Fungal Transcriptome RNA for expression profiling …

… are open to both domestic and international applicants from any institution type and at any career stage. … users are able to work with Berkeley Lab.  However, users from certain countries (Iran, North Korea, Cuba, and Syria), need DOE permission and authorization from other U.S. government agencies to work with Berkeley …

… information into actionable insights and solutions. Genome-enabled biology provides solutions to strengthen … focused on the fundamental science of animal and insect microbiomes, or on plant pathogens not associated with … of scope, as are marine-focused projects (more than 185 km from land). …

… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological systems, sheds … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using …

… interactions with their environments and with each other, from defending against predators to aiding in symbiotic … realized under standard laboratory conditions, with only a small portion of the biosynthetic gene clusters (BGCs) being … broader goal of enhancing biotechnological applications, from biofuel production to improving the resilience and …

… A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … to seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …

… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … talk about genome mining using the GEM catalog in  this episode of the JGI  Natural Prodcast . Using this massive … BGCs in IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …

… profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling …

… to better understand the plant-associated terrestrial world. Research Team    … Plant microbiomes hold the amazing ability to influence plant … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 …

… In our warming world, we’ll need corn, sorghum and other crops to grow well … Torrres have looked into traits that could transfer from grasses into other crops.  One grass they studied just happened to be the same species that covered World Cup pitches in 2022.                     …