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Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … sequence of these four letters represents an organism’s genetic code, or genome, which underlies physical features … connections between the structures and functions of the genes encoded in the genome sequence is part of the …
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Natural Prodcast Episode 6: Marc Chevrette
… that can’t live without their host. They have no extra genes hanging around, they still dedicate 20-30% of their … of many different things in microbiology and biology in general. And her efforts first at Yale and now at University … with JGI to do genome sequencing, so to look for the genes that are involved in putting antibiotics together, …
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Evolution of a Fungal Gene Expression Regulator
… that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in … – similar to the MAC clusters for 6mA), rather than in genes, which suggests that 5mC may play a role in genome …
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Examples: Successful LOIs & Submissions
PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated … strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … … range shifts of plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant …
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Single Cell Research Group
… focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great … In particular during an era of ‘homology creep’, function prediction as purely based on annotation may not be …
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iPHoP: A Matchmaker for Phages and their Hosts
… in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding … what these viruses can do. Building on existing virus-host prediction approaches, researchers have created a new … aimed to streamline a process they often took on: generating virus-host predictions via multiple routes, then …
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Natural Prodcast Episode 15: Katherine Duncan
I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … to you, but they’re unprecedented in the terms biosynthetic gene clusters and genome size. And they’re so complex. … produce, their ability to evolve, to go with horizontal gene transfer and run with it and produce different …
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Natural Prodcast Episode 7: Ben Shen
… technology to help access complicated natural product gene clusters, and we’re all really excited about that, and … that we are working on into perspective in the field in general. So what has happened in the past two decades is … a hundred thousand fungal strains. And if you believe the prediction that each strain will produce –  has the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel … in breeding efforts, and also because 8X switchgrass is generally thought to harbor less genetic and phenotypic (visible traits) diversity. After our …
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Gene duplication and genetic innovation in cereal genomes
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The quantitative genetics of gene expression in Mimulus guttatus
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