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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … call is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate … into biological function. The  New Investigator and Functional Genomics calls do not require an LOI.  Projects …
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Structure, function and diversity of the healthy human microbiome
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Wildfire-dependent changes in soil microbiome diversity and function
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Defining the core Arabidopsis thaliana root microbiome
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Partners
… our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA … DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close partnerships with other user facilities …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. …
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An Integrated Dataset to Understand Ecosystem Interaction
… first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … data set will help identify how different elements of the ecosystem interact and respond to changes in the … bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel …
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Doubling Down on Known Protein Families
… novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Strain Engineering
… The focus of this group, in recent years, has been to bring … to no genetic tools enabling heterologous expression and functional exploration.  The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, … is expanding current capabilities in strain engineering and functional assays and supporting new methodologies to …
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