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Environmental Genomics Group
… group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information … uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… about the metabolomic data that, very nicely, with new approaches like that one push forward by Pieter Dorrestein – … this approach. DAN UDWARY: It’s really great. The other approaches of using homology, you’re only going to find the … us, we want to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, …
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Natural Prodcast Episode 8: Eric Schmidt
… took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  DAN:  And … doing was pursuing with Jacques Ravel, at TIGR, metagenome sequencing, which was very early days for that technology. … us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, …
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Natural Prodcast Episode 15: Katherine Duncan
… before– or kind of around about when the first genome sequencing was done. But natural products– marine natural … that. Dan Udwary: Yeah, making biofuels has to be really cost-efficient or you have to extract some other value from … products chemistry. I get asked a lot about modern or mixed approaches, and we use a lot of those in my group. But, …
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Data Policy
PI and receive permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  … Policy … Data Management at the JGI … Policy Definitions … Sequencing and Metabolomics projects … DNA synthesis …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… has adapted to expand its habitat range. But at what cost?  A collaborative team led by researchers at the … has adapted to expand its habitat range, but at what cost? In the following guest piece, postdoctoral researcher … quantitative genetic, landscape, and niche modeling approaches, we contrasted the diversity of 4X and 8X …
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Natural Prodcast Episode 11: Marnix Medema
… gene clusters. And I had heard the first rumors of people sequencing like these enormous numbers of genomes, like 20 … we noticed that BiG-SCAPE was very scalable compared to approaches before that. But when you wanted to include more … families across all genomes. And the acceleration of genome sequencing, especially in bacteria, has been enormous. There …
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Natural Prodcast Episode 7: Ben Shen
… started collaborating with Ben and his group to work on sequencing, synthesis and genome mining technology to help … because – mainly it’s due to the emerging technology on DNA sequencing and synthetic biology. But also the metagenomics … decades is that today, one thing is the ability of genome sequencing. So, in the past the natural products have been …
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Natural Prodcast Episode 6: Marc Chevrette
… the Broad that was looking to develop new methods for DNA sequencing of microbes. And what kept breaking our methods … it’s very situational. And every microbe is a special snowflake. So… ALISON: Yeah, I mean, would you say that all … what’s exciting and what’s not? MARC: Yeah, so one of the approaches that Tiny Earth is using to be different than …
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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Natural Prodcast Episode 19: Bill Fenical
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Science Programs
… scientific impact of user projects, develop cutting edge approaches for and with users, and create computational …
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