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… the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance … proposal details with the PI and proposing team. The work plan is formalized in a Statement of Work document. At …

Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who … capabilities of multiple user facilities Investigators with DOE mission-relevant projects that call for expansive … more about our individual calls and other opportunities to work with the JGI … User Support …

Craig Townsend’s lab at Johns Hopkins. Brian went on to work at a groundbreaking company in the early 2000s called … at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk about there, and I’ll … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …

… were postdocs together in the mid 2000s, I guess. You were working for Brad Moore. I was working for Bill Gerwick as … to that here in North America. ALISON:  Yeah, and it does sound like your career has incorporated a lot of … to try and create an open source database of all known microbial natural products. So if you think about natural …

Alison Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so …

… synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER … may be submitted at any time. Support is limited to work included in the BER-funded proposal, and PIs must … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI …

… scientists to drive innovations that align with DOE's missions. … The DNA Synthesis Program plays a central … design-build transition in synthetic biology engineering workflows. … The IMG/M system serves as a community resource … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …

… because chemistry means a lot, especially when you’re working in natural products right. There’s many different … I didn’t know how to get towards that.  Organic chemistry doesn’t really help with getting to something other than the … tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of … gene clusters (BGCs) being expressed. The program works to uncover these hidden biochemical resources by … platforms, tools and data for deciphering regulatory networks, and refining experimental approaches to explore …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … Clum, A. et al. (2021)  DOE JGI metagenome workflow . mSystems 6(3). 10.1128/MSYSTEMS.00804-20 Nayfach …

Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … Science   355(6322):294-298 Paez-Espino D. et al. (2017) IMG/VR: a database of cultured and uncultured DNA Viruses …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … Woyke T ., Doud D. F. R., Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods 14(11): …