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Sequencing the fungal tree of life
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …
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NeLLi — Symposium on New Lineages of Life
… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis. Further, the symposium showcases …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and …
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Searching for new branches on the tree of life
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group … CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …
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Towards a balanced view of the bacterial tree of life
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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … of always working on natural products but just different tools and how to really access and manipulate these pathways … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called …
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Diversity of cytosine methylation across the fungal tree of life
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Leveraging single-cell genomics to expand the fungal tree of life
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THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them tantalizing …
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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