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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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DNA Synthesis Program
The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, …
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental approaches … host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts … 15, 1569–1584. Nayfach et al., 2020. CheckV assesses the quality and completeness of metagenome-assembled viral …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those virus-host interactions? Do generalist viruses run rampant, …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … goes, it must be a duck. But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it … University and the University of Michigan studying how virus infections cause significant metabolic changes in …
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Quality MAGnified
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Compendium of Metabolomic and Genomic Datasets for Cyanobacteria: Mined the Gap
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10 From JGI on the 2019 Highly Cited Researchers List
… effort to develop guidelines and best practices for defining virus data quality. Reported in Nature Biotechnology, the work brought …
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Natural Prodcast Episode 12: Nadine Ziemert
… it worked pretty well. DAN UDWARY: No, they were very high quality. Yeah, for sure. NADINE ZIEMERT: Yeah, Dan… it’s a … even in primary metabolism or in certain snips of viruses or something. I don’t know. Then I think making sure …
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Individual genome assembly from complex community short-read metagenomic datasets
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CSP New Investigator Call
… delay processing, while samples that are of insufficient quality or quantity will preclude approval for processing. … …
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CSP Functional Genomics
… delay processing, while samples that are of insufficient quality or quantity will preclude approval for processing. … …
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