Search

… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …

… that the Joint Genome Institute is a “Department of Energy user science facility”, and so today what you’re going to … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the …

SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … of always working on natural products but just different tools and how to really access and manipulate these pathways … it’s– so far, so good. But we’ll add more hardware and more software as we need to go. JACLYN WINTER: You’re going to …

… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … more into the meta genome mining. We started to build the tools for natural product researchers that easily can … to– DAN UDWARY: Yeah, that’s always a problem in academic software development. NADINE ZIEMERT: Yeah. And I think, …

… now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … you see sometimes. So pretty recently, Merck put out some software called DeepBGC , which is a machine learning tool …

Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …

The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …

… train students and professors in laboratory techniques and data analyses compile original data for improving fungal … comparative analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or …

The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …

… of a successful sequencing project. It is imperative that users properly assess DNA or RNA mass prior to shipment to … DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality requirements … GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or …