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Software Looking for information on our software, including BBTools ? Click to find that on our archive site.  …

The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …

… of a successful sequencing project. It is imperative that users properly assess DNA or RNA mass prior to shipment to … DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality requirements … GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … to talk to us way back, when there was going to be a JGI user meeting. That didn’t quite happen, this year. But do … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …

CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …

… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they …

The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …

Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …

… (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes … Genomes group is focused on:  Developing state-of-the-art data processing and analysis pipelines for the …

…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …

Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , … then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in …