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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … The research efforts of the group have concentrated in demonstrating the … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial …
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User Support
… authentication enabled to log in. Check our Help Site for additional information, including a Login Walkthrough … specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also … ( https://data.jgi.doe.gov ) Coordinate data analysis tool tutorials, as needed Upon completion of all work …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be … we might play on air, email us at JGI-comms. That’s JGI dash C-O-M-M-S @ lbl.gov . And, because we’re a user …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … For further details, please reach out to the Group Lead …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … Laboratory. Being a User Facility means that scientists from all over the world bring us big problems related to …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … virus sequences vary widely. In a previous effort, an international consortium recommended specific … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The emphasis is on … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … from the University of Wisconsin, recorded at the Society for Industrial Microbiology (SIMB) Natural Products meeting …
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Natural Prodcast Episode 18: A CSP Primer
… It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good …
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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …
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