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JGI@25: Using Team Science to Build Communities Around Data
… of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James Leebens-Mack of the University of Georgia, along with 100 of …
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Operating Expenses
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Natural Prodcast Episode 24: Jackie Winter and SMC
… organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been … to get you through the day. So for me, it was if a door opens, take an opportunity to explore it, and you’ll find … has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it …
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FICUS-NERSC/KBASE
… proposals in biological data science as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call …
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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with access … of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that …
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JGI Portals
… Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. …
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Sequencing Submission Requirements for DNA Synthesis
… an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… plants and bring them back to the lab. The weedy grass was green millet (Setaria viridis), a small model grass with a … (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a very high quality … Program , sequences of several hundred green millet plant genomes were generated, though the final analyses focused on …
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New Lineages of Life Group
… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … sibling to Cyanobacteria associate with eukaryotes in the open ocean .”  Current Biology , Volume 34 Issue 22. Krinos, … Conservative taxonomy and quality assessment of giant virus genomes with GVClass. ”  npj Viruses, Volume 2 Article 60. …
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Year in Review: JGI’s 2018 Progress Report Available Now
… notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake …
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Natural Prodcast Episode 9: Roger Linington
… they approached scientific problems. And so that sort of opened my eyes to the idea that you could go internationally … to read broadly and think broadly about problems and to be open minded about other ways in which you might address or … effort that we’ve put together to try and create an open source database of all known microbial natural …
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Mission
… developing sustainable materials and complements DOE initiatives in CMM science. Enhancing agriculture: JGI users … treatment, mitigation, or pollution, including biogas, greenhouse gases, climate change, wastewater treatment, …
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