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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not … and soon, with trillions. The development of efficient, automated approaches to analyze and classify sequence data …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … of the JGI User Agreement , JGI User Agreement for Federal Agencies , DNA Synthesis Appendix  and DNA …
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User Support Analysis Group
… User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus … workflows for new product types, to the development of automated analysis pipelines for standard sequencing …
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FICUS-NERSC/KBASE
… discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly … The researcher then submits a proposal for consideration in the next review cycle. All proposals …
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JGI-TMF Critical Minerals and Materials Call
… Minerals and Materials call represents a unique opportunity for researchers to request the capabilities and expertise of … science, accelerating discoveries and developing transformative bio-based technologies that address challenges in … is no cost to the user and no granting of funds. All JGI data is made publicly available in accordance with the JGI’s …
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Who We Are
… staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … Systems Biology Knowledgebase and the National Microbiome Data Collective.    … We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its …
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Frequently Asked Questions: Project Management
… can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products … come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online using the Work Initiation Process (WIP) interface.    For commonly asked questions about JGI’s proposal calls and …
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Synthetic Biology Lab
… technologies to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the … libraries.  We have developed and continue to improve automated assembly pipelines bringing in new technologies, … For further details, please reach out to the Group Lead …
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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Conservative taxonomy and quality assessment of giant virus genomes with GVClass
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Plant Program User Advisory Committee
… program's strategy, operations and scientific relevance and quality. The Committee does not perform management functions nor does it direct the Program's …
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