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Natural Prodcast Episode 20: Brian Bachmann
… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …
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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is …
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Offerings & Capabilities
… To meet these needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell …
Learn more
Natural Prodcast Episode 13: Francisco Barona Goméz
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … This continues our little section on international genome miners, and today we have Francisco Barona-Goméz, or … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … made publicly available on relevant JGI portals (i.e. JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) … embargo starting at construct or strain delivery.  Detailed sequence information and constructs are made publicly …
Learn more
Frequently Asked Questions: Proposal Submission
… on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact … The deliverables can range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so … We’re looking at a schematic of different pathways in a microbial cell, it looks like. It could be a eukaryotic …
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Frequently Asked Questions: Project Management
… listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public projects on the JGI Genome Portal . The PI and all authorized users can also … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …
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Tanja Woyke
… Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed … of California, Merced's School of Natural Sciences since 2015. Prospective users with specific questions regarding …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And …
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Natural Prodcast Episode 23: Aaron Puri
… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language of microbial cell-cell communication. And he told us about his … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that …
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