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… sentinel oaks of the Golden State have been succumbing to a pathogen. This ‘“alien’” organism — one previously unseen — … campaign beginning in 2000. In an effort to fingerprint the pathogen and trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … around drug discovery, which includes screening methods, genome mining in cave microbiomes, and using engineered … was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really happened yet. It was …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … in a minute – we work for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science … Alison Takemura and I work here with you, Dan, at the Joint Genome Institute. And do you want to hear a little bit about …

… Sorghum genome serves as a reference for the highly complex … two identical sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid sugarcane, an … For the portion of the work conducted by the Joint Genome Institute and the Joint BioEnergy Institute, support …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … This continues our little section on international genome miners, and today we have Francisco Barona-Goméz, or … off, rather than negatively get rid of the genes from their genome. FRANCISCO BARONA-GOMEZ: Exactly right. It, we feel, …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular …

… Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of these … it’s something we wouldn’t have even started.”  The reference genome of Setaria viridis is available on JGI’s …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … phylogenetic relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … possible to do something that the field refers to as “genome mining”. So, if you can sequence the DNA and actually … all of the genes. So that’s one of the real utilities for genome mining is you can identify biosynthetic gene clusters …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from the human gut microbiome. Nature …

… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … Conservative taxonomy and quality assessment of giant virus genomes with GVClass. ”  npj Viruses, Volume 2 Article 60. … tool for phylogenetic distance matrix analysis and genome grouping …