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Natural Prodcast Episode 13: Francisco Barona Goméz
Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural products and the science and scientists of … natural products systems. This conversation came about because he challenged me on my use of the term “secondary … pathways with many, many enzymes, but even if people do not report back this these observations, most, if not all, of …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the … patent rights, rights in technical data, project reporting to the DOE, and publication requirements. An … will notify all parties when work may begin. DNA SYNTHESIS PROPOSALS: Additional Requirements ACADEMIC, NON-PROFIT or …
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Natural Prodcast Episode 11: Marnix Medema
Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the science and scientists of … and I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … not in this field either. So they used antiSMASH and they report findings using antiSMASH. And it’s actually quite a …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel … available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of … deeply branching in the Gammaproteobacteria. Scientific reports. 5 (1), 1-10 Schulz et al. (2014) Life in an unusual …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across … expressability: We are developing a Heterologous Expression Report Card toolkit (HERC-tk) to enable users to identify … and ever-improving, and to facilitate discussion and debate about the data. It is also a place where the community can …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  … there are lots of evidence of evolution of BGCs, and you’ve reported on that, but what do you think about that? How much …
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Natural Prodcast Episode 23: Aaron Puri
… you guys. Schedules are hard. But, I’m working on it because I really do want you all to hear this great conversation … stuff with cool bacteria that I’m fascinated to learn more about. He works with methylotrophs, which are a group of … by Inverse Stable Isotopic Labeling . ACS Chem Biol. 2021 Aug 20;16(8):1332-1338. doi: 10.1021/acschembio.1c00329. …
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Natural Prodcast Episode 15: Katherine Duncan
So we’ve got Kate here today, and we wanted to talk to her about a whole list of things. So we have a Scripps … and we want to talk about molecular networking, because I really enjoyed the review that you wrote with Marnix … able to, say, see biosynthetic pathways? Or can we see a progression in metabolites and metabolite families? Or are …
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Natural Prodcast Episode 9: Roger Linington
… we recorded in my hotel room at SIMB, or the Society for Industrial Microbiology conference that took place in January … this happen. We had a really fun conversation with Roger about all this, in terms of how to build an international … define standards for the minimum information that should be reported. And to develop a schema by which you can report …
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Natural Prodcast Episode 17: Cassandra Quave
… and now COVID. We also wanted to talk to her because she’s written a book about her life and her science, called The Plant Hunter , … no way to be 100% sure that the chemistry that they’re even reporting on is from the plant they say they’re working on. …
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FICUS-NERSC/KBASE
Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … the DOE JGI, NERSC and KBase issued a call for proposals in biological data science as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase …
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Community Science Program
… and evaluated based on their DOE relevance.  For accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the user. … All proposals first undergo technical review by JGI … at large. In most cases where the JGI provides more customized analysis, the JGI also participates in publication …
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