Search

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … the pandemic in Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun … Episode Transcript …

… Global chocolate brands can’t exist without cocoa According to … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … the  HudsonAlpha Institute for Biotechnology . An updated reference genome for  T. cacao has now been completed and …

… Survey of Setaria's natural diversity reveals seed dispersal in wild … helps plants thrive in warm, arid environments. Corn and sugarcane are among the major high-yield C4 crops, as are … 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of these …

… Trained on environmental data, a new JGI tool more accurately … research — and is capable of discovering and modelling complex biological sequences such as biosynthetic gene … the data it is trained on,” Wang said. “Most models rely on reference genomes to train genome foundation models. …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae … The Secondary Metabolites Program targets the vast and underexplored … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed …

… Miscanthus  sequence offers insights into benefits of polyploidy … of related candidate bioenergy feedstock crops such as sugarcane and sorghum. The M. sinensis genome analysis … simpler (and smaller) models, Miscanthus has a large and complex genome whose evolutionary history and perennial …

… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … biosynthetic gene clusters and genome size. And they’re so complex. There’s so much still to understand. Dan Udwary: …

… DAN: Hey, everybody. Welcome back for another episode of … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … also be production, as we were mentioning before, of more complex secondary metabolites that an organism might want to …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … The Fungal & Algal Program harnesses cutting-edge sequencing … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm …

… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA … The research efforts of the group have concentrated in demonstrating … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … Embargo : A period in which data is not publicly available in JGI systems or outside … For sequencing or metabolomics projects: data are subject to a  one-year embargo …