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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by …
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Natural Prodcast Episode 9: Roger Linington
… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … let me know! I’m dying to hear from you. Toss an email to  jgi[email protected] , or leave us a review on Apple Podcasts … lot in the past. This sort of idea of, “there’s a lot of data out there: let’s put it together”. So you have – at …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle Marriott … and synthetic biology AI/ML-enabled laboratory automation, data integration and modeling This three-day joint user …
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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on an …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining … … The SMC provides complete sequence and annotation data for secondary metabolite biosynthetic gene clusters …
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User Support
The JGI Project Management Office carries out a number of … Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and …
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CSP Large Scale Call
… that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All proposals … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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CSP New Investigator Call
… is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … event. “The tools we use to process and analyze these data are diverse and porting these codes to GPUs present …
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Partners
The JGI leverages its existing partnerships and develops others … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to datasets, …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … is challenging and often results in highly fragmented data, which limits the ability of researchers to accurately …
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