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Natural Prodcast Episode 21: Elizabeth Parkinson
… exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … people what that number is. BETSY PARKINSON: So micromolar, 10 to the negative 6th. Nanomolar, 10 to the negative 9th. … understand, can we utilize sequences of these TetRs to identify what molecule might bind them and then allow for their …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel feedstocks of interest to … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Research and Development Program of China (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … in a minute – we work for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science … data that the JGI produces to try to find and identify natural product biosynthetic gene clusters and to do …
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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … and engineered strains. This approach allows for the identification of key functional traits that have direct … biocontrol agents dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to …
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An Integrated Dataset to Understand Ecosystem Interaction
… dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science To … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … back to the first complete genome of a poplar tree in 2006. … This research was sponsored by the U.S. Department …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … function within plants, microbes, and ecosystems. Identifying and analyzing primary and secondary metabolites … molecular network of metabolites designed to demystify the complexity of dissolved organic matter (DOM) across …
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User Programs
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's Deputy for … Achievement 2009 LBNL Outstanding Performance Award 2006 AHA Lievre Fellowship Award, 2000 Boehringer Ingelheim …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… about natural products. So in Brad’s lab, I worked on identifying and characterizing haloperoxidases from bacteria. … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … And you have these different types of particulate like 2.5, 10 PPMs and just the size of the particle and how far they …
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Draft Genome Sequences of 10 Strains of the Genus Exiguobacterium
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Natural Prodcast Episode 6: Marc Chevrette
You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … going to be involved in signaling. We’re not perfect at identifying what these pathways are yet. So there’s still a lot … at over 270 places now worldwide with a rate of around 10,000 students a year. And that was those numbers were …
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