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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial … genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature Microbiology an important addition … system that allows scientists to conduct genome-wide screens and explore biosynthetic pathway. Thus far, the JGI …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired … He did this with aplomb, managing his dedicated “Ops Team” who dealt with leaky roofs, backed-up toilets, and …
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Axel Visel
Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel … in interactions with the scientific community at large. … 2021 LBNL Director’s Award for Exceptional Achievement in … LA, Tringe SG, Visel A , Woyke T, Wang Z, Rubin EM (2011). Metagenomic discovery of biomass-degrading genes and …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, … under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: 10.46936/10.25585/60000800 ) conducted by the U.S. Department of Energy …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening … to go unripened and a blotchy yellowing of leaves, a team of researchers sequenced  P. trifoliata ’s genome. …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth and Sports of the … Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental … of Energy operated under Contract No. DE-AC02-05CH1123. Partial support was provided by the National Center … Institute of General Medical Sciences (NIGMS) (8 P20 GM103451-12) from the National Institutes of Health (NIH).  … …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of … in wild type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: 10.1016/j.devcel.2022.01.008 Relevant Links: …
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The More the Merrier: Making the Case for Plant Pan-genomes
… merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each … or more genome copies from additional parents or duplication, also known as “polyploidy,” is common among flowering plants; at least once during their …
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Viruses Reprogram Cells into Different Virocells
… be a duck. But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a … cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. … (FICUS) initiative through an award to MBD and MBS (#2582) and used resources at the DOE Joint Genome Institute …
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I-Min (Amy) Chen
… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key … infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in 2006, she was …
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