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JGI Early Career Researchers Featured in mSystems Special Issue
Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted … microbes. A comprehensive map of viruses including host information, Roux says, would be the foundation upon which … Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   … The U.S. Department of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … produce antibiotics. Still, the team estimates that genomic information is only available for a fraction of extant … physiologically and enzymatically, with descriptions of how their activities influence biochemical reactions. For …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… described a novel technique to access high-quality genomic information using minute quantities of DNA derived from … at the bottom.  Perhaps most notably, JGI’s Microbial Program head Tanja Woyke and her colleagues harnessed the … metagenomics and single cell genomics have afforded JGI users and the larger research community a means to access …
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Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist
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Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … that could help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the …
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Kjiersten Fagnan
Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a … Data Collaborative where she leads infrastructure and user-centered design efforts. … PhD Applied Mathematics … approaches in support of meeting DOE mission critical programmatic goals. … Joubert et al., “Attacking the Opioid …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of interest.” The combination of field data and genetic information has allowed the research team to associate … he added. Jeremy Schmutz , head of the  JGI Plant Program , drew parallels between these  common gardens and …
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Corals in Hot Water Get Help From Their Microbes
As waters warm due to climate change, corals are in mortal … But corals comprise multiple organisms: a coral host, a photosynthetic microalgae, and a little-characterized …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… it lose less water in a hot, dry environment. Figuring out how plants evolved to deal with hot and dry conditions could … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Streamlining Regulon Identification in Bacteria
… coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … any particular factor. Predicting those relationships bioinformatically is almost impossible, and the experimental … Both are members of the JGI’s Secondary Metabolite Science Program, which Mouncey leads. RIViT-seq is a three-step …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale … bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His …
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