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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… “survival of the fittest” theory — the most expressed genes found across each of the fungal species were … protein-coding hotspots. “Ensuring that the most expressed genes are also the most efficient at making proteins likely … relevance with helping to synthesize codon-optimized fungal genes for various biotechnological purposes,” he said. To …
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Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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A Collaboration to Improve Plant Genome Annotations Across Species
… the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under … improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning they have no known … add additional experimentally derived biological roles to genes. Sarah:  How many plants did you all look at? Avinash: …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the … for comparative genomics studies, offering insight into genes critical for roles including plant growth and cell …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Marine Microbe Contains Multitudes
… the team unprecedented resolution to study the network of genes that contribute to the metabolisms that individual … the sunlit upper waters (above 200 m, or 656 ft), and have genes to support a photoheterotrophic lifestyle. In other … hand, thrive in the dark, below 200 m (656 ft). They have genes supporting a chemolithoautotrophic way of life; they …
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