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Increasing the Thermodynamic Driving Force of the Phosphofructokinase Reaction in Clostridium thermocellum
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … possible to seek out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in the soil for the first time. The current study applied a multi-step …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … my first publication and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the … She continued working virtually with her JGI mentors for nearly three years after her internship. “That level of …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … marine natural products, getting into the ocean and looking for molecules from the very beginning of the field. I … Moore on the Salinispora project,  so this is pretty comfortable territory for us, and I’m grateful to be working …
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Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science … genomes. The team first applied the workflow to a curated reference set of over 300 genomes spanning the fungal … processes. The team then extended their analysis beyond the reference set, using two additional approaches. To search …
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Introducing New Members of the JGI User Executive Committee
… of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of … efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at …
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Promoting the Power of Viral Metagenomics
… piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and best practices for characterizing uncultivated viruses. Following up on … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …
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Tracing the Evolution of Shiitake Mushrooms
… 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … genomes and their evolution could provide strategies for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a …
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JGI@25: Building a Better Bean
… in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as … by Jeremy Schmutz of the JGI and the HudsonAlpha Institute for Biotechnology; Phil McClean of North Dakota State … to have with a faster-cooking bean itself.” The original reference genome yielded what are now widely-used molecular …
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