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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering … abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies of some …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio … highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals have been approved … such as the Copper River Delta wetland pond, cycle carbon. Using plots at the Harvard Forest long-term warming …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … that showcase our collaborations and capabilities to enable great science that will help solve energy and … days and that are widely used by many, many scientists.”  Using samples of rumen-digested switchgrass, researchers …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to applying artificial intelligence to … protocol for higher efficiency in Issatchenkia orientalis using electroportation and heat shock methods Asees Kaur …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … that showcase our collaborations and capabilities to enable great science that will help solve energy and … productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from almost … Secondary Metabolites Program head as well as our JGI Director. Click to learn more about the program's areas of focus, …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences … TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five fungal … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship … What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each … who is now a graduate researcher in Jing Xu’s lab and a teaching assistant for the UC Merced Quantitative and …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of the … confirm the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete … the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists … cell breaks apart and its DNA is copied millions of times using a method named Multiple Displacement Amplification to …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … depth required). Methylation detection currently only works using subread data, PacBio is working on support to use CCS …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … are desirable from a biofuels production perspective. By using genomic database alignment tools, researchers searched …
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