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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …
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A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
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Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all … will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the genes in …
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CSP Functional Genomics
… genomics research and to help them translate genomic information into biological function.  The emphasis is on … user and no granting of funds. … All proposals will be externally peer-reviewed for scientific merit, DOE mission … about the general review process or find details on the internal synthetic biology review process .  … Proposers are …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team … Neurospora crassa, and to identify and decide on the order in which this fungus breaks down plant cell wall materials …
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Bacterial Microcompartments
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a cell … looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is an …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… to Tanja Woyke, who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … these methanogenic microorganisms was narrowed to a type of archaea called  Euryarchaeota . These ancient, single-celled … with both the JGI and EMSL. New Methane-Makers Have Alternate Metabolic Pathways And there is something special …
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