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Denoising inferred functional association networks obtained by gene fusion analysis
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1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions
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Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Pangenome analysis of Liriodendron reveals presence/absence variations associated with growth traits
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JGI announces 2025 Functional Genomics awardees
… Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who translate genomic … program, these projects integrate cutting-edge genomic data with predictive modeling and bioengineering to advance …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… who has been appointed the Loretta Purdy Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar … it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and …
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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