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Building Sphagnum Genomic Resources
… potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon … to the atmosphere. Peat bogs also serve the ecosystem by minimizing flood risks and filtering water. Peat formed … bogs have two distinct zones: Hummocks and hollows flow like hills and valleys, on a smaller scale. Depending on the …
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Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … they often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the … a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … That study multiplied the number of known viral genes by a factor of 16. The same year, the JGI expanded its …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … at maximum) maintained by a workforce that numbered more than 100 at its peak, all the machines were switched off. Over …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to … habitat range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … was a group lead at Stanford Human Genome Center directed by Richard Myers, and among the Center staff that moved to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … difficult. Our Plant Gene Atlas resource addresses that by providing standardized experimental conditions, tissue …
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Gut Fungi: Unexpected Source of Novel Chemicals
… from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for … The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … to help bolster the bioeconomy. Summary A team led by Michelle O’Malley, a chemical engineer at the University …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … as a biofuel. To this end, a team of researchers led by Jeremy Schmutz of the JGI and the HudsonAlpha Institute …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from …
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