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Long-term warming modulates diversity, vertical structuring of microbial communities, and sulfate reduction in coastal Baltic Sea sediments
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Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater
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Northern peatland microbial communities exhibit resistance to warming and acquire electron acceptors from soil organic matter
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Microorganisms thriving together as communities
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Decoding Yellowstone’s Microbial Mats
… Life as we know it wouldn’t exist without cyanobacteria; they … began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … duplication event — bioinformatics expertise, as well as sequencing for all global populations of eelgrass used in …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … by DOE’s Bioenergy Research Centers, which initiated the sequencing of the switchgrass genome. DOE’s  Billion Ton …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The … nearly 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 … Berkeley [N.V.]); L’Ecole Normale Superieure-CFM Data Science Chair (E.P.); and the Office of Science (BER), …
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JGI Launches Latest Strategic Plan
… quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year history. In … our near- and long-term goals. And, by the way, as far as sequencing goes, the JGI’s next petabase will likely be achieved in the next three …
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Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation
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