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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers … exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When … the samples, without being able to distinguish which gene belongs to each individual microbial species within a …
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How to Target a Microbial Needle within a Community Haystack
… Microbiology has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … strides in generating genome sequences for members of the microbial world through bulk community sequencing … of HCR-FISH+FACS for selectively enriching low abundance microbial groups from complex natural communities. This type …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … support from the  Exascale Computing Project , the JGI — along with the National Energy Research Scientific Computing … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the … gene regulation at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on … Biology, University of California, San Diego Postdoctoral training in bioinformatics, Lawrence Berkeley National …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific … rigorous research, written skill, above all else, determination. Rhondene Wint, an alumna of the DOE Joint … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts
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Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics
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Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities
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Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome
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Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
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Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment▿ †
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