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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … While are still working on finalizing the tree and related publication the tree is still in development and not … (2018) Fungal Genome Annotation. In Methods in molecular biology 1775:171-184. Furthermore, Annotration SOP with …
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10 From JGI on the 2019 Highly Cited Researchers List
… Cross-Field category Research Scientist Natalia Ivanova, Biology & Biochemistry category Prokaryote Super Program … and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs Deputy … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more …
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Nigel Mouncey
… research expertise in secondary metabolites and synthetic biology. Dr. Mouncey has a long-standing interest in … and served as President of the Society for Industrial Microbiology and Biotechnology in 2022-2023.   Commentary … acts as a principal advisor to the Department of Energy biology programs, and represents the Joint Genome Institute …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the under-sampled area of the plant phylogeny and improving genome annotations. For that …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Training the Next Generation of Talent
… as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural Sciences … I’ll take that knowledge back with me.” Now a second-year evolutionary biology student in David Ardell’s lab, he also …
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Ancient Algae Reveal Secrets of Plant Evolution
… in sustainable agriculture and clean energy. These evolutionary strategies that helped plants thrive under … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … in improving plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm …
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2022 Progress Report
… DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data …
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Learning to Look
… these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, Ensuring Host Survival …
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Tomas Tyml
… understanding of the roles these associations play in the evolutionary history of life. …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… graduate intern): In her final year in the Quantitative & Systems Biology PhD program at UC Merced under the coadvisement of … JGI internship led to her co-authorship on a 2017 Plos Biology “The JGI-UC Merced Genomics Distinguished Graduate …
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Natural Prodcast Episode 22: Alison Narayan
… interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural Products meeting … them. So I really came at it not necessarily based on the biology really just from as a simple organic chemist, can I …
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